Episode 1
Aired Sep 17, 2012
The Future in the Past
After Brennan is accused of murder, her father (Ryan O'Neal) helps her hide from the FBI; Booth and the team think an evil tech genius (Andrew Leeds) manipulated evidence to implicate Brennan.
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Episode 2
Aired Sep 24, 2012
The Partners in the Divorce
A powerful divorce lawyer with a lot of enemies is murdered; the three-month separation between Booth and Brennan starts to take its toll.
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Episode 3
Aired Oct 1, 2012
The Gunk in the Garage
After an explosion in a hotel garage, the Jeffersonian team tries to identify victims by investigating remains found at the scene; Sweets works with a temporary partner (Danielle Panabaker) while Booth works on the department's budget.
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Episode 4
Aired Oct 8, 2012
The Tiger in the Tale
While investigating the death of an animal expo employee, the team is drawn into the world of animal trafficking; Brennan thinks she would be a good presidential candidate; Sweets and Daisy make a change.
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Episode 5
Aired Nov 5, 2012
The Method in the Madness
The team investigates the death of a woman whose body was found in the trash; Booth invites Sweets to stay with him and Brennan until he finds a new place.
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Episode 6
Aired Nov 12, 2012
The Patriot in Purgatory
While examining bodies deemed unidentifiable, interns uncover the identity of a man who died in the 9/11 terrorist attacks.
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Episode 7
Aired Nov 19, 2012
The Bod in the Pod
A pod containing the remains of a crime-scene cleaner washes onto a beach; Angela and Hodgins learn a secret about Cam.
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Episode 8
Aired Nov 26, 2012
The But in the Joke
When a street artist falls into his own adhesive, he also lands on human remains that stay glued to his body; Booth searches a comedy club for suspects.
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Episode 9
Aired Dec 3, 2012
The Ghost in the Machine
When a psychic tries to help the spirit of a boy whose death the team is investigating, members of the team start to question their own feelings on life and death.
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Episode 10
Aired Jan 14, 2013
The Diamond in the Rough
When the team investigates the death of a dancer who was about to audition for a dance competition show, Booth and Brennan go under cover as contestants.
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Episode 11
Aired Jan 14, 2013
The Archaeologist in the Cocoon
The team investigates the death of an archaeologist who had just made an important discovery.
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Episode 12
Aired Jan 21, 2013
The Corpse on the Canopy
When Angela and Hodgins wake to find a corpse in their bedroom, they believe Pelant is behind it; against Booth's wishes, Angela and Hodgins start their own investigation.
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Episode 13
Aired Jan 28, 2013
The Twist in the Plot
The team investigates when two bodies are found at the same burial plot; Brennan and Booth discuss after-death arrangements; Daisy returns for the first time since the breakup.
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Episode 14
Aired Feb 4, 2013
The Doll in the Derby
When a female roller derby skater is killed and dismembered, Angie goes under cover to help solve the case; Cam tries to learn more about Booth's secretive hospital appointments.
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Episode 15
Aired Feb 11, 2013
The Shot in the Dark
While in the hospital after being shot at the lab, Brennan struggles with visions of her mother that defy her usual logic; evidence may link Brennan's attacker to the Jeffersonian.
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Episode 16
Aired Feb 16, 2013
The Friend in Need
As the team investigates the death of a seemingly innocent 15-year-old boy, they learn that he was involved in illegal activity.
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Episode 17
Aired Feb 25, 2013
The Fact in the Fiction
When a well-educated but eccentric intern starts working at the Jeffersonian, Brennan tries to be more open-minded about scientific questions.
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Episode 18
Aired Mar 4, 2013
The Survivor in the Soap
The team investigates the death of a young man whose remains were found at a hazardous waste disposal facility; Cam and Arastoo struggle to keep their relationship secret; Brennan and Booth try to decide where to take their vacation.
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Episode 19
Aired Mar 18, 2013
The Doom in the Gloom
The investigation into the death of a former Marine leads the team to a group obsessed with preparing for the apocalypse; Sweets finds an apartment.
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Episode 20
Aired Mar 25, 2013
The Blood From the Stones
The team investigates when an undercover cop turns up dead with a bag of diamonds inside his body; Brennan struggles to be likable as the subject of a documentary film.
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Episode 21
Aired Apr 1, 2013
The Maiden in the Mushrooms
The team investigates when a TV producer is murdered; Christine is accused of biting a classmate; Hodgins uses his tools at the Jeffersonian to chemically re-create Finn's hot sauce.
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Episode 22
Aired Apr 15, 2013
The Party in the Pants
The team investigates when a stock broker -- who moonlights as a stripper -- is murdered; after a 24-year absence, Booth's mother (Joanna Cassidy) shows up with a request.
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Episode 23
Aired Apr 22, 2013
The Pathos in the Pathogens
The team tries to prevent a viral outbreak during an investigation into a journalist's murder, whose infected body is found at a biohazard facility; when Arastoo Vaziri is affected by the mutated virus, the only way to save him is to solve the case.
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Episode 24
Aired Apr 29, 2013
The Secret in the Siege
Christopher Pelant returns to toy with the Jeffersonian team; an investigation reveals a string of murders tied to FBI agents; Brennan evaluates her relationship with Booth.
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